IL_9QEG_099

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGAG*CG

Length

6 nucleotides

Bulged bases

9QEG|1|Aa|G|65, 9QEG|1|Aa|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_099 not in the Motif Atlas

Homologous match to IL_5J7L_005

Geometric discrepancy: 0.1127

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9QEG|1|Aa|C|64
9QEG|1|Aa|G|65
9QEG|1|Aa|A|66
9QEG|1|Aa|G|67
*
9QEG|1|Aa|C|102
9QEG|1|Aa|G|103

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain At

Small ribosomal subunit protein bS20