IL_9QEG_101

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

9QEG|1|Aa|A|129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_101 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.2374

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|U|128
9QEG|1|Aa|A|129
9QEG|1|Aa|A|130
9QEG|1|Aa|C|131
*
9QEG|1|Aa|G|239
9QEG|1|Aa|A|240

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

Small ribosomal subunit protein bS16

Chain Aq

Small ribosomal subunit protein uS17

Chain At

Small ribosomal subunit protein bS20