IL_9QEG_112

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_112 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9QEG|1|Aa|C|512
9QEG|1|Aa|G|513
9QEG|1|Aa|G|514
9QEG|1|Aa|C|515
9QEG|1|Aa|U|516
9QEG|1|Aa|A|517
9QEG|1|Aa|A|518
9QEG|1|Aa|C|519
*
9QEG|1|Aa|G|548
9QEG|1|Aa|G|549

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

Small ribosomal subunit protein uS4

Chain Al

Small ribosomal subunit protein uS12