IL_9QEG_114

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9QEG|1|Aa|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_114 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0644

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|C|577
9QEG|1|Aa|G|578
9QEG|1|Aa|U|579
9QEG|1|Aa|A|580
9QEG|1|Aa|A|581
9QEG|1|Aa|A|582
9QEG|1|Aa|G|583
*
9QEG|1|Aa|C|889
9QEG|1|Aa|G|890

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

Small ribosomal subunit protein uS5

Chain Al

Small ribosomal subunit protein uS12

Chain Aq

Small ribosomal subunit protein uS17