IL_9QEG_120
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GA*UGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QEG_120 not in the Motif Atlas
- Geometric match to IL_5J7L_031
- Geometric discrepancy: 0.0643
- The information below is about IL_5J7L_031
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
9QEG|1|Aa|G|662
9QEG|1|Aa|A|663
*
9QEG|1|Aa|U|759
9QEG|1|Aa|G|760
9QEG|1|Aa|A|761
9QEG|1|Aa|C|762
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ah
- Small ribosomal subunit protein uS8
- Chain Ao
- Small ribosomal subunit protein uS15
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