3D structure

PDB id
9QEG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.21 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QEG_120 not in the Motif Atlas
Geometric match to IL_5J7L_031
Geometric discrepancy: 0.0643
The information below is about IL_5J7L_031
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

9QEG|1|Aa|G|662
9QEG|1|Aa|A|663
*
9QEG|1|Aa|U|759
9QEG|1|Aa|G|760
9QEG|1|Aa|A|761
9QEG|1|Aa|C|762

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain Ah
Small ribosomal subunit protein uS8
Chain Ao
Small ribosomal subunit protein uS15

Coloring options:


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