IL_9QEG_126

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_126 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0495

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9QEG|1|Aa|C|787
9QEG|1|Aa|A|788
9QEG|1|Aa|A|789
9QEG|1|Aa|A|790
9QEG|1|Aa|C|791
*
9QEG|1|Aa|G|807
9QEG|1|Aa|G|808
9QEG|1|Aa|U|809
9QEG|1|Aa|A|810
9QEG|1|Aa|G|811

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Ak

Small ribosomal subunit protein uS11