IL_9QEG_143

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_143 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.2351

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9QEG|1|Aa|C|1417
9QEG|1|Aa|A|1418
9QEG|1|Aa|C|1419
*
9QEG|1|Aa|G|1502
9QEG|1|Aa|A|1503
9QEG|1|Aa|A|1504
9QEG|1|Aa|G|1505

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain 9

A-site tRNA molecule

Chain Al

Small ribosomal subunit protein uS12

Chain d

mRNA molecule