IL_9QEH_013

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_013 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.0835

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9QEH|1|A|A|581
9QEH|1|A|G|582
9QEH|1|A|A|583
9QEH|1|A|G|584
*
9QEH|1|A|U|597
9QEH|1|A|G|598
9QEH|1|A|A|599
9QEH|1|A|U|600

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein uL13

Chain O

Large ribosomal subunit protein bL20