IL_9QEH_017

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_017 not in the Motif Atlas

Homologous match to IL_9DFE_015

Geometric discrepancy: 0.0549

The information below is about IL_9DFE_015

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9QEH|1|A|C|717
9QEH|1|A|C|718
9QEH|1|A|G|719
*
9QEH|1|A|C|851
9QEH|1|A|U|852
9QEH|1|A|G|853

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain J

Large ribosomal subunit protein uL15