IL_9QEH_036
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9QEH|1|A|A|1171, 9QEH|1|A|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QEH_036 not in the Motif Atlas
- Homologous match to IL_4WF9_040
- Geometric discrepancy: 0.214
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9QEH|1|A|G|1068
9QEH|1|A|G|1069
9QEH|1|A|A|1070
9QEH|1|A|A|1071
9QEH|1|A|A|1072
9QEH|1|A|A|1073
9QEH|1|A|G|1074
*
9QEH|1|A|C|1168
9QEH|1|A|G|1169
9QEH|1|A|A|1170
9QEH|1|A|A|1171
9QEH|1|A|A|1172
9QEH|1|A|A|1173
9QEH|1|A|U|1174
9QEH|1|A|G|1175
9QEH|1|A|U|1176
9QEH|1|A|A|1177
9QEH|1|A|C|1178
9QEH|1|A|C|1179
9QEH|1|A|G|1180
9QEH|1|A|G|1181
9QEH|1|A|G|1182
9QEH|1|A|G|1183
9QEH|1|A|C|1184
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain H
- Large ribosomal subunit protein uL13
- Chain K
- Large ribosomal subunit protein uL16
Coloring options: