IL_9QEH_052

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UAAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_052 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1104

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9QEH|1|A|U|1519
9QEH|1|A|A|1520
9QEH|1|A|A|1521
9QEH|1|A|G|1522
*
9QEH|1|A|U|1558
9QEH|1|A|G|1559
9QEH|1|A|A|1560
9QEH|1|A|G|1561

Current chains

Chain A

23S rRNA

Nearby chains