IL_9QEH_056

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_056 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0444

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9QEH|1|A|G|1710
9QEH|1|A|G|1711
9QEH|1|A|A|1712
9QEH|1|A|A|1713
9QEH|1|A|C|1714
9QEH|1|A|U|1715
9QEH|1|A|C|1716
9QEH|1|A|G|1717
9QEH|1|A|G|1718
*
9QEH|1|A|C|2017
9QEH|1|A|U|2018
9QEH|1|A|G|2019
9QEH|1|A|U|2020
9QEH|1|A|C|2021

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14