IL_9QEH_071

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9QEH|1|A|A|2466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_071 not in the Motif Atlas

Homologous match to IL_9DFE_081

Geometric discrepancy: 0.0823

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

9QEH|1|A|G|2097
9QEH|1|A|A|2098
*
9QEH|1|A|U|2465
9QEH|1|A|A|2466
9QEH|1|A|C|2467
9QEH|1|A|C|2468

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain C

Large ribosomal subunit protein uL2