IL_9QEH_084

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CUC*(G7M)CGAG

Length

8 nucleotides

Bulged bases

9QEH|1|A|G|2603, 9QEH|1|A|A|2604

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_084 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0727

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9QEH|1|A|C|2537
9QEH|1|A|U|2538
9QEH|1|A|C|2539
*
9QEH|1|A|G7M|2601
9QEH|1|A|C|2602
9QEH|1|A|G|2603
9QEH|1|A|A|2604
9QEH|1|A|G|2605

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain Z

Large ribosomal subunit protein bL32