IL_9QEH_091

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

9QEH|1|A|U|2716, 9QEH|1|A|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_091 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.0751

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9QEH|1|A|U|2714
9QEH|1|A|G|2715
9QEH|1|A|U|2716
9QEH|1|A|A|2717
9QEH|1|A|C|2718
*
9QEH|1|A|G|2745
9QEH|1|A|G|2746
9QEH|1|A|U|2747
9QEH|1|A|A|2748
9QEH|1|A|G|2749

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein bL17

Chain N

Large ribosomal subunit protein bL19