IL_9QEH_094

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_094 not in the Motif Atlas

Homologous match to IL_4WF9_106

Geometric discrepancy: 0.071

The information below is about IL_4WF9_106

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9QEH|1|A|G|2858
9QEH|1|A|G|2859
*
9QEH|1|A|U|2898
9QEH|1|A|A|2899
9QEH|1|A|C|2900

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein bL17