IL_9QEH_101
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QEH_101 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0939
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9QEH|1|B|C|69
9QEH|1|B|G|70
9QEH|1|B|A|71
9QEH|1|B|U|72
9QEH|1|B|G|73
9QEH|1|B|G|74
9QEH|1|B|U|75
9QEH|1|B|A|76
9QEH|1|B|G|77
*
9QEH|1|B|C|94
9QEH|1|B|U|95
9QEH|1|B|A|96
9QEH|1|B|G|97
9QEH|1|B|A|98
9QEH|1|B|G|99
9QEH|1|B|U|100
9QEH|1|B|A|101
9QEH|1|B|G|102
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- Large ribosomal subunit protein uL16
- Chain T
- 50S ribosomal protein L25
- Chain U
- Large ribosomal subunit protein bL27
Coloring options: