IL_9QIW_030

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

9QIW|1|L5|A|943, 9QIW|1|L5|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_030 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.1933

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9QIW|1|L5|A|723
9QIW|1|L5|C|724
*
9QIW|1|L5|G|942
9QIW|1|L5|A|943
9QIW|1|L5|A|944
9QIW|1|L5|U|945

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

Large ribosomal subunit protein uL30