IL_9QIW_047

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9QIW|1|L5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_047 not in the Motif Atlas

Homologous match to IL_8CRE_031

Geometric discrepancy: 0.4356

The information below is about IL_8CRE_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QIW|1|L5|G|1545
9QIW|1|L5|C|1546
*
9QIW|1|L5|G|1612
9QIW|1|L5|A|1613
9QIW|1|L5|C|1614

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34