IL_9QIW_056

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_056 not in the Motif Atlas

Homologous match to IL_8CRE_049

Geometric discrepancy: 0.2332

The information below is about IL_8CRE_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9QIW|1|L5|A|1858
9QIW|1|L5|C|1859
9QIW|1|L5|U|1860
*
9QIW|1|L5|A|1874
9QIW|1|L5|C|1875
9QIW|1|L5|U|1876

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Guanine nucleotide-binding protein-like 3

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21