IL_9QIW_065

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9QIW|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_065 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.1107

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9QIW|1|L5|G|2001
9QIW|1|L5|A|2002
9QIW|1|L5|G|2003
9QIW|1|L5|U|2004
9QIW|1|L5|G|2005
*
9QIW|1|L5|C|2014
9QIW|1|L5|U|2015
9QIW|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CF

mRNA turnover protein 4 homolog

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain Lt

Large ribosomal subunit protein uL11