IL_9QIW_071

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_071 not in the Motif Atlas

Homologous match to IL_8CRE_065

Geometric discrepancy: 0.1253

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9QIW|1|L5|G|2358
9QIW|1|L5|U|2359
9QIW|1|L5|A|2360
9QIW|1|L5|G|2361
9QIW|1|L5|U|2362
9QIW|1|L5|A|2363
9QIW|1|L5|G|2364
*
9QIW|1|L5|C|3858
9QIW|1|L5|G|3859
9QIW|1|L5|A|3860
9QIW|1|L5|A|3861
9QIW|1|L5|A|3862
9QIW|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17