3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGGAAUG*CGAGAGA
Length
14 nucleotides
Bulged bases
9QIW|1|L5|U|2661, 9QIW|1|L5|A|2674
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_082 not in the Motif Atlas
Homologous match to IL_8P9A_301
Geometric discrepancy: 0.1596
The information below is about IL_8P9A_301
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93476.1
Basepair signature
cWW-tSH-L-R-tSS-tHS-L-R-cWW
Number of instances in this motif group
6

Unit IDs

9QIW|1|L5|U|2656
9QIW|1|L5|G|2657
9QIW|1|L5|G|2658
9QIW|1|L5|A|2659
9QIW|1|L5|A|2660
9QIW|1|L5|U|2661
9QIW|1|L5|G|2662
*
9QIW|1|L5|C|2672
9QIW|1|L5|G|2673
9QIW|1|L5|A|2674
9QIW|1|L5|G|2675
9QIW|1|L5|A|2676
9QIW|1|L5|G|2677
9QIW|1|L5|A|2678

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain LZ
60S ribosomal protein L27
Chain Lc
60S ribosomal protein L30
Chain Lg
60S ribosomal protein L34
Chain Lp
60S ribosomal protein L37a

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