3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGAAGG*UGUUGACG
Length
14 nucleotides
Bulged bases
9QIW|1|L5|A|3663, 9QIW|1|L5|U|3679, 9QIW|1|L5|C|3683
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_089 not in the Motif Atlas
Homologous match to IL_8CRE_088
Geometric discrepancy: 0.2105
The information below is about IL_8CRE_088
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_20047.1
Basepair signature
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9QIW|1|L5|C|3660
9QIW|1|L5|G|3661
9QIW|1|L5|A|3662
9QIW|1|L5|A|3663
9QIW|1|L5|G|3664
9QIW|1|L5|G|3665
*
9QIW|1|L5|U|3677
9QIW|1|L5|G|3678
9QIW|1|L5|U|3679
9QIW|1|L5|U|3680
9QIW|1|L5|G|3681
9QIW|1|L5|A|3682
9QIW|1|L5|C|3683
9QIW|1|L5|G|3684

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain Lp
60S ribosomal protein L37a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2096 s