IL_9QIW_094

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_094 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.3106

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9QIW|1|L5|U|3715
9QIW|1|L5|C|3716
9QIW|1|L5|A|3717
9QIW|1|L5|A|3718
9QIW|1|L5|A|3719
9QIW|1|L5|G|3720
9QIW|1|L5|U|3721
*
9QIW|1|L5|A|3732
9QIW|1|L5|A|3733
9QIW|1|L5|U|3734
9QIW|1|L5|G|3735
9QIW|1|L5|A|3736
9QIW|1|L5|A|3737
9QIW|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36