IL_9QIW_105

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9QIW|1|L5|A|4298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_105 not in the Motif Atlas

Geometric match to IL_7DLZ_001

Geometric discrepancy: 0.2803

The information below is about IL_7DLZ_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QIW|1|L5|G|4297
9QIW|1|L5|A|4298
9QIW|1|L5|U|4299
*
9QIW|1|L5|A|4313
9QIW|1|L5|C|4314

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Nucleolar GTP-binding protein 2

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain CJ

Ribosome production factor 2 homolog

Chain CK

Ribosome biogenesis regulatory protein homolog