IL_9QIW_108

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_108 not in the Motif Atlas

Homologous match to IL_8CRE_114

Geometric discrepancy: 0.4166

The information below is about IL_8CRE_114

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9QIW|1|L5|C|4412
9QIW|1|L5|C|4413
9QIW|1|L5|A|4414
9QIW|1|L5|A|4415
9QIW|1|L5|G|4416
*
9QIW|1|L5|C|4426
9QIW|1|L5|G|4427
9QIW|1|L5|A|4428
9QIW|1|L5|C|4429
9QIW|1|L5|G|4430

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

GTP-binding protein 4

Chain CH

Ribosome biogenesis protein NSA2 homolog