IL_9QIW_109
3D structure
- PDB id
- 9QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CAU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QIW_109 not in the Motif Atlas
- Geometric match to IL_8P9A_337
- Geometric discrepancy: 0.1255
- The information below is about IL_8P9A_337
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
9QIW|1|L5|C|4466
9QIW|1|L5|A|4467
9QIW|1|L5|U|4468
*
9QIW|1|L5|G|4489
9QIW|1|L5|C|4490
9QIW|1|L5|G|4491
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CC
- Guanine nucleotide-binding protein-like 3
- Chain CD
- GTP-binding protein 4
- Chain CE
- Protein LLP homolog
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
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