3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GAU*ACC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_112 not in the Motif Atlas
Homologous match to IL_8P9A_340
Geometric discrepancy: 0.1673
The information below is about IL_8P9A_340
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

9QIW|1|L5|G|4495
9QIW|1|L5|A|4496
9QIW|1|L5|U|4497
*
9QIW|1|L5|A|4503
9QIW|1|L5|C|4504
9QIW|1|L5|C|4505

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CB
Nucleolar GTP-binding protein 2
Chain CD
GTP-binding protein 4
Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23

Coloring options:


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