3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CUCAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_117 not in the Motif Atlas
Homologous match to IL_8CRE_125
Geometric discrepancy: 0.1002
The information below is about IL_8CRE_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

9QIW|1|L5|C|4596
9QIW|1|L5|U|4597
9QIW|1|L5|C|4598
9QIW|1|L5|A|4599
9QIW|1|L5|G|4600
9QIW|1|L5|U|4601
9QIW|1|L5|A|4602
9QIW|1|L5|C|4603
*
9QIW|1|L5|G|4608
9QIW|1|L5|G|4609
9QIW|1|L5|A|4610
9QIW|1|L5|A|4611
9QIW|1|L5|C|4612
9QIW|1|L5|C|4613
9QIW|1|L5|G|4614

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CA
Eukaryotic translation initiation factor 6
Chain CB
Nucleolar GTP-binding protein 2
Chain CD
GTP-binding protein 4
Chain CE
Protein LLP homolog
Chain CH
Ribosome biogenesis protein NSA2 homolog
Chain LB
60S ribosomal protein L3
Chain LH
60S ribosomal protein L9
Chain LV
60S ribosomal protein L23

Coloring options:


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