IL_9QIW_120

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_120 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.1388

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9QIW|1|L5|U|4638
9QIW|1|L5|G|4639
9QIW|1|L5|C|4640
*
9QIW|1|L5|G|4659
9QIW|1|L5|G|4660
9QIW|1|L5|G|4661

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CI

Probable ribosome biogenesis protein RLP24

Chain Ld

60S ribosomal protein L31