IL_9QIW_123

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGCG*CUG

Length

7 nucleotides

Bulged bases

9QIW|1|L5|C|4741

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_123 not in the Motif Atlas

Homologous match to IL_8CRE_130

Geometric discrepancy: 0.4026

The information below is about IL_8CRE_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9QIW|1|L5|C|4739
9QIW|1|L5|G|4740
9QIW|1|L5|C|4741
9QIW|1|L5|G|4742
*
9QIW|1|L5|C|4958
9QIW|1|L5|U|4959
9QIW|1|L5|G|4960

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Protein LLP homolog