IL_9QIW_126

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

9QIW|1|L5|C|4757, 9QIW|1|L5|U|4758, 9QIW|1|L5|A|4764, 9QIW|1|L5|G|4870, 9QIW|1|L5|C|4871, 9QIW|1|L5|G|4873, 9QIW|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QIW|1|L5|C|4756
9QIW|1|L5|C|4757
9QIW|1|L5|U|4758
9QIW|1|L5|C|4759
9QIW|1|L5|G|4760
9QIW|1|L5|G|4761
9QIW|1|L5|A|4762
9QIW|1|L5|U|4763
9QIW|1|L5|A|4764
9QIW|1|L5|G|4765
*
9QIW|1|L5|U|4869
9QIW|1|L5|G|4870
9QIW|1|L5|C|4871
9QIW|1|L5|G|4872
9QIW|1|L5|G|4873
9QIW|1|L5|A|4874
9QIW|1|L5|G|4875
9QIW|1|L5|U|4876
9QIW|1|L5|G|4877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a