3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GCG*CC
Length
5 nucleotides
Bulged bases
9QIW|1|L5|C|4900
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_131 not in the Motif Atlas
Geometric match to IL_3W3S_001
Geometric discrepancy: 0.3169
The information below is about IL_3W3S_001
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

9QIW|1|L5|G|4899
9QIW|1|L5|C|4900
9QIW|1|L5|G|4901
*
9QIW|1|L5|C|4920
9QIW|1|L5|C|4921

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CE
Protein LLP homolog

Coloring options:


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