IL_9QJC_009

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QJC_009 not in the Motif Atlas

Homologous match to IL_9PN5_022

Geometric discrepancy: 0.2765

The information below is about IL_9PN5_022

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.4

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9QJC|1|1|G|725
9QJC|1|1|G|726
9QJC|1|1|G|727
9QJC|1|1|G|728
*
9QJC|1|1|U|741
9QJC|1|1|G|742
9QJC|1|1|C|743
9QJC|1|1|A|744
9QJC|1|1|C|745

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L18-A