IL_9QJC_013

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCAUCAG*CUCAAG

Length

14 nucleotides

Bulged bases

9QJC|1|1|A|1190, 9QJC|1|1|U|1191, 9QJC|1|1|C|1192, 9QJC|1|1|C|1316, 9QJC|1|1|A|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QJC|1|1|C|1187
9QJC|1|1|U|1188
9QJC|1|1|C|1189
9QJC|1|1|A|1190
9QJC|1|1|U|1191
9QJC|1|1|C|1192
9QJC|1|1|A|1193
9QJC|1|1|G|1194
*
9QJC|1|1|C|1314
9QJC|1|1|U|1315
9QJC|1|1|C|1316
9QJC|1|1|A|1317
9QJC|1|1|A|1318
9QJC|1|1|G|1319

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

Ribosome biogenesis protein MAK21

Chain O

60S ribosomal protein L16-A

Chain S

60S ribosomal protein L20-A