IL_9QJC_014

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

9QJC|1|1|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QJC_014 not in the Motif Atlas

Homologous match to IL_9PN5_057

Geometric discrepancy: 0.2657

The information below is about IL_9PN5_057

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9QJC|1|1|C|1385
9QJC|1|1|A|1386
9QJC|1|1|G|1387
*
9QJC|1|1|C|1420
9QJC|1|1|G|1421

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Nucleolar complex protein 2

Chain C

60S ribosomal protein L4-A

Chain D

Protein MAK16

Chain e

60S ribosomal protein L32