IL_9QQA_022

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

9QQA|1|A2|U|489

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_022 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1637

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

9QQA|1|A2|U|488
9QQA|1|A2|U|489
9QQA|1|A2|A|490
*
9QQA|1|A2|U|512
9QQA|1|A2|A2M|513

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24