IL_9QQA_039

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GCCG

Length

6 nucleotides

Bulged bases

9QQA|1|A2|C|840, 9QQA|1|A2|C|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_039 not in the Motif Atlas

Geometric match to IL_8P9A_336

Geometric discrepancy: 0.2172

The information below is about IL_8P9A_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9QQA|1|A2|C|834
9QQA|1|A2|C|835
*
9QQA|1|A2|G|839
9QQA|1|A2|C|840
9QQA|1|A2|C|841
9QQA|1|A2|G|842

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24