IL_9QQA_044

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_044 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.1182

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9QQA|1|A2|G|929
9QQA|1|A2|G|930
9QQA|1|A2|C|931
9QQA|1|A2|C|932
*
9QQA|1|A2|G|1011
9QQA|1|A2|A|1012
9QQA|1|A2|A|1013
9QQA|1|A2|U|1014

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein eS27

Chain Aa

40S ribosomal protein S3a

Chain Am

Small ribosomal subunit protein uS15

Chain Bc

60S ribosomal protein L30