IL_9QQA_066

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

9QQA|1|A2|A|1490

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_066 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.1677

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9QQA|1|A2|4AC|1338
9QQA|1|A2|G|1339
*
9QQA|1|A2|C|1489
9QQA|1|A2|A|1490
9QQA|1|A2|OMG|1491

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS14

Chain Ab

40S ribosomal protein S2

Chain Ac

40S ribosomal protein S3

Chain At

Small ribosomal subunit protein uS10