IL_9QQA_067

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_067 not in the Motif Atlas

Geometric match to IL_8P9A_442

Geometric discrepancy: 0.1316

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

9QQA|1|A2|PSU|1348
9QQA|1|A2|G|1349
9QQA|1|A2|G|1350
*
9QQA|1|A2|C|1381
9QQA|1|A2|G|1382
9QQA|1|A2|A|1383

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

Small ribosomal subunit protein uS2

Chain Ab

40S ribosomal protein S2

Chain Ac

40S ribosomal protein S3

Chain Aq

Small ribosomal subunit protein eS17