IL_9QQA_069
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUGC*(OMG)AGG
- Length
- 9 nucleotides
- Bulged bases
- 9QQA|1|A2|U|1398
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQA_069 not in the Motif Atlas
- Geometric match to IL_5LQO_002
- Geometric discrepancy: 0.341
- The information below is about IL_5LQO_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9QQA|1|A2|C|1396
9QQA|1|A2|A|1397
9QQA|1|A2|U|1398
9QQA|1|A2|G|1399
9QQA|1|A2|C|1400
*
9QQA|1|A2|OMG|1448
9QQA|1|A2|A|1449
9QQA|1|A2|G|1450
9QQA|1|A2|G|1451
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- Small ribosomal subunit protein RACK1
- Chain Ap
- Small ribosomal subunit protein uS9
- Chain Aq
- Small ribosomal subunit protein eS17
- Chain At
- Small ribosomal subunit protein uS10
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