IL_9QQA_085

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9QQA|1|A2|U|1722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_085 not in the Motif Atlas

Geometric match to IL_8CRE_472

Geometric discrepancy: 0.1207

The information below is about IL_8CRE_472

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

9QQA|1|A2|U|1721
9QQA|1|A2|U|1722
9QQA|1|A2|G|1723
*
9QQA|1|A2|U|1813
9QQA|1|A2|A|1814

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23

Chain Az

Small ribosomal subunit protein eS32

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

Ribosomal protein L23