IL_9QQA_089

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_089 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1341

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9QQA|1|A2|C|1743
9QQA|1|A2|G|1744
9QQA|1|A2|G|1745
9QQA|1|A2|A|1746
9QQA|1|A2|U|1747
*
9QQA|1|A2|A|1789
9QQA|1|A2|G|1790
9QQA|1|A2|A|1791
9QQA|1|A2|A|1792
9QQA|1|A2|G|1793

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain BW

Ribosomal protein L24