IL_9QQA_110
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQA_110 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.1051
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9QQA|1|B5|G|415
9QQA|1|B5|U|416
9QQA|1|B5|G|417
9QQA|1|B5|A|418
9QQA|1|B5|A|419
9QQA|1|B5|A|420
9QQA|1|B5|C|421
*
9QQA|1|B8|G|13
9QQA|1|B8|U|14
9QQA|1|B8|G|15
9QQA|1|B8|G|16
9QQA|1|B8|A|17
9QQA|1|B8|U|18
9QQA|1|B8|C|19
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BP
- Large ribosomal subunit protein uL22
- Chain Be
- Ribosomal protein L32
Coloring options: