IL_9QQA_118

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9QQA|1|B5|G|660, 9QQA|1|B5|A|661, 9QQA|1|B5|C|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_118 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.208

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

9QQA|1|B5|G|488
9QQA|1|B5|G|489
*
9QQA|1|B5|C|659
9QQA|1|B5|G|660
9QQA|1|B5|A|661
9QQA|1|B5|C|662
9QQA|1|B5|C|663

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BQ

eL18

Chain Br

[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B