IL_9QQA_127

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

9QQA|1|B5|G|723, 9QQA|1|B5|G|724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_127 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.1421

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9QQA|1|B5|C|721
9QQA|1|B5|U|722
9QQA|1|B5|G|723
9QQA|1|B5|G|724
9QQA|1|B5|G|725
*
9QQA|1|B5|C|838
9QQA|1|B5|G|839

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BM

60S ribosomal protein L14

Chain BS

Large ribosomal subunit protein eL20