IL_9QQA_129

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

9QQA|1|B5|C|732, 9QQA|1|B5|C|733, 9QQA|1|B5|C|823, 9QQA|1|B5|C|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_129 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3575

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9QQA|1|B5|C|731
9QQA|1|B5|C|732
9QQA|1|B5|C|733
9QQA|1|B5|G|734
*
9QQA|1|B5|C|822
9QQA|1|B5|C|823
9QQA|1|B5|C|824
9QQA|1|B5|G|825

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14