IL_9QQA_133

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCUCG

Length

8 nucleotides

Bulged bases

9QQA|1|B5|C|1105, 9QQA|1|B5|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_133 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2856

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

9QQA|1|B5|C|997
9QQA|1|B5|U|998
9QQA|1|B5|C|999
*
9QQA|1|B5|G|1104
9QQA|1|B5|C|1105
9QQA|1|B5|U|1106
9QQA|1|B5|C|1107
9QQA|1|B5|G|1108

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain Bb

60S ribosomal protein L29